Sentence examples for using the default analysis from inspiring English sources
Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings and global scaling as first normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
Ct values were generated using the default analysis settings.
The data were analyzed with the Robust Multichip Analysis (RMA) algorithm using the default analysis settings and global scaling as the normalization method by Parterk Genomics Suite 6.5.
We consistently obtained good signal detection rates across all 14 microarrays used in the study, with an average signal detection of 83.9% (range of 60.54% to 98.59%) using the default analysis parameters.
Data were analyzed with the GCOS 1.2 software (Affymetrix), using the default analysis settings; global scaling as first normalization method, with a trimmed mean target intensity value (TGT) of each array arbitrarily set to 100.
Scanned GeneChip images were processed using the Affymetrix GCOS 1.4 software to obtain the intensity value signal and the absent/present detection call for each probe set using the default analysis settings and global scaling as first normalization method.
We used the default analysis method for generating a threshold of significance for differential expression (p-value with a false discovery rate ≤ 0.05 and a fold change > 2).
Data was processed by using the default sequence analysis parameters and analyzed with Beckman Coulter CEQ 8000 software.
Libraries were sequenced on either an Illumina GAIIx or an Illumina HiSeq using the default RTA analysis software.
Sample analysis was carried out using the default parameters for dPCR analysis using the Fluidigm analysis software.
Genetic association filtering and analysis was performed using the default pipeline for single variant analysis in the Efficient and Parallelizable Association Container Toolbox (EPACTS; http://genome.sph.umich.edu/wiki/EPACTS) generating 2228 high quality SNPs.
