Sentence examples for using the consensus tree from inspiring English sources

Proml analysis was then repeated on the original, non-bootstrapped dataset using the consensus tree as an input guide tree.

The resulting trees have been which were then clustered using the consensus tree program, version 3.69 of the Phylip package [ 84] to infer a consensus tree.

We used the function gls from the package nlme for R to fit the GLS linear regression using the consensus tree, then again, using the correct tree.

This has consequences for the precision of β0 and β1: estimates based on true GLS and Bayesian AT are more precise than estimates based on methods using the consensus tree.

Hybridization splits networks were created using the consensus tree of marker U146437 as a control that highly supported the red-fruited clade (99%) plus the consensus tree of the marker being tested for an introgression, with balanced sets of taxa (same taxa in each tree).

Otherwise, averaging the tree clusters present in the given gene trees and using the consensus tree approach as the starting point for building the consensus network is a natural way of computing the support species tree structure in the absence of reliable additional information.

As organismal tree we use the consensus tree calculated from the individual gene trees using the majority-rule consensus method (see Methods).

We used the consensus tree output from the reduced data set as an input and allowed for no alterations in the phylogeny.

Figures  4A and B presents, respectively, the maximum likelihood tree using PHYML and the consensus tree using MrBayes for VP1.

Trees were produced using NEIGHBOR, and the consensus tree produced using CONSENSE.

DOI: http://dx.doi.org/10.7554/eLife.01202.007 To taxonomically identify Prevotella OTU4, OTU12, and OTU934, we generated a phylogenetic tree using the consensus 16S sequences of these OTUs and matched regions from known Prevotella taxa.