Sentence examples for using the completed sequence from inspiring English sources
Annotation and structural analysis of Hd6 in all cultivated varieties and wild rice accessions were performed using the est2genome (http://emboss.sourceforge.net/) and sim4 (http://globin.cse.psu.edu/) software using the completed sequence (GenBank accession AB036788) of Kasalath Hd6 as a reference [7, 29].
A new search using the complete sequence as query revealed that Bg30009 has no homologous gene or protein sequence in available databases.
Here, we extend this analysis using the complete sequence and annotation of this genome.
We tested whether these three complexes are paraphyletic using the complete sequence of the small subunit rDNA (SSrDNA).
Using the complete sequence of helena as a query, we found 62 helena sequences in the D. simulans genome (see Additional File 1 for details).
Using the complete sequence of tomato genome as well as transcriptomes at different stages/organs [ 34] we investigated HM genes through a bioinformatic approach.
However, using the complete sequence dataset we were able to identify two key positions (aa position 106 and 237) that are predicted by at least two different methods to be under positive selection.
The distribution of Jaccard indices for all possible pairs of mice is shown in Figure 2. We carried out these analyses both by using the complete sequence sets for each mouse, and also by subsampling equal numbers of sequences from each mouse, so as to avoid any bias imposed by sample size.
This analysis was also performed for all sequenced genomes belonging to the phylum Firmicutes and genus Clostridium using the complete sequenced microbial genome collection from the NCBI (http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi, accessed: 06/23/2011).
As shown in the phylogenetic tree prepared using the complete sequences of 16S rDNA (Fig. 2), Shewanella spp. were closely related to marine/aquatic γ-proteobacteria Aeromonas, Vibrio, Photobacterium, Pseudoalteromonas, Colwellia, and Psychromonas.
Using the complete sequences of four grasses, we have performed a novel comparative analysis of class 2 TEs.
