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At last, the segmentation is achieved using the clustering results.
The merging scheme is recursively performed until the number of clusters becomes less than K M. Using the clustering results, the proposed method calculates transformed music features m j * = [ m j * ( 1 ), m j * ( 2 ), …, m j * ( N M j ) ] ′ ( j = 1, 2, …, N ), where m j * ( l M ) ( l M = 1, 2, …, N M j ) is a cluster number assigned to a corresponding chroma vector.
Using the clustering results generated with DAVID the data were clustered according the annotation to the GO terms "homeostasis," "cell death," "defense response/inflammation," "immune response," and "proteolysis".
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Furthermore, relevant gene markers have been identified using the clustering result produced by the proposed clustering method and demonstrated visually.
We use the clustering results of C-CENI (Fig. 2b) on the same example introduced previously to further explain how C-CENI works.
In addition, we used the clustering results presented in Table 1 to compare the prediction performance of SEED with the other methods.
We performed the isolate assemblies with different values of k and pooled the results using the clustering algorithm.
In fact, the MLL algorithm without using the clustering option provided even slightly better results in the smaller one of the two E-MAP networks (Secretory-Map; Additional File 4).
Java Treeview 1.1.3 was used to visualize the clustering results.
The slightly modified "plot.phylo" function from the analysis of phylogenetics and evolution (ape) package was used to display the clustering results [ 16].
The slightly modified "plot.phylo" program from analyses of phylogenetics and evolution (ape) package of R was used to show the clustering results [ 11, 12].
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com