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Multiple alignments were then carried out between the deleted sample sequences and the corresponding reference genome sequence, using the ClustalW programme [36].
PAR amino acid sequences deduced both from our NHP PAR sequences and NCBI database sequences were aligned using the ClustalW programme.
Multiple protein sequence alignments were performed using the ClustalW programme (version 1.83) [ 26].
The sequencing data were analysed using the ClustalW programme in order to determine the rate of redundancy in the library.
A redundancy level of 26% in the SSR-enriched genomic library was observed through multiple sequence alignment analysis using the ClustalW programme; in total 5 copies of one clone was observed, 4 copies of five clones, 3 copies of 10 clones and 2 copies of 65 clones.
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The sequences were aligned using the ClustalW program.
A multiple amino acid sequence alignment was carried out using the ClustalW program (http://www.ebi.ac.uk/clustalW).ac.uk/clustalW
Sequence alignments were performed using the ClustalW program (Thompson et al. 1994).
The collected amino acid sequences were aligned using the CLUSTALW program (http://www.ddbj.nig.ac.jp/search/clustalw-j.html) with standard parameters.
Sequence alignment was carried out using the ClustalW program [48].
Sequences were aligned using the ClustalW program within the MEGA 4 package.
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