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A circular plot (fig. 1) of the aligned sequences was generated using the Circos package (Krzywinski et al. 2009).
Ideograms of plant chromosomes/scaffolds/contigs were generated using the circos package (http://circos.ca/, last accessed on November 11th , 2014 [ 112].
Circular visualization of genome data was performed using the circos package (www.circos.ca, last accessed November 8, 2013) (Krzywinski et al. 2009) and graphically edited with the GIMP-package (www.gimp.org, last accessed November 8, 2013).
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The circular representation of mtDNA was made using the Circos software package, version 0.62 [ 38].
The information about all chromosomal rearrangements was then synthesized in a tabular matrix which can be represented in a circular plot using the Circos software package (Krzywinski et al. 2009).
MIRA-Seq data was also used to construct a heat map of the bovine fibroblast methylome using the Circos software package to illustrate the genome-wide nature of DNA methylation.> -wrap-foot> *Data obtained by MIRA-Seq and presented as fold difference in read count of methylated regions.
Circular representation of the genome was produced using the Circos software [27].
Circular maps for the two main replicons CHR1 and CHR2 (Figure 1) were drawn using the Circos software [214].
Synteny was visualized using the Circos software [ 77].
A graphical representation of the classical Bordetellae pan-genome was created using the Circos software [ 21].
The epistatic interaction between QTLs was illustrated using the Circos software [ 75].
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