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Using the Catalogue of Somatic Mutations in Cancer (COSMIC), we construct networks of interacting cancers and genes.
In total, using the Catalogue of Life Taxonomic Classification, 88% of all retrieved records were assigned to one of the 24 phyla common with NCBI Taxonomy; see supplementary materials: gbif_Classification_2000_Plus.txt and NCBI_GBIF_overall_data.xlsx.xlsx
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It is believed that a rough guide to this structure can be found in the Bibliotheca, a Roman-era mythological handbook transmitted under the name of Apollodorus of Athens which used the Catalogue as a primary source for many genealogical details and appears to have followed reflect the poem's overall arrangement.
The reliability of the retrieved parameters for galaxies with known spectroscopic redshifts was checked using the mock catalogue of artificial galaxies (Malek et al., 2013).
Using the comprehensive catalogue of information we retrieved from [ 13], we compared a gene's expression level in genomes where the gene shows repeat instability and where it does not.
Moreover, by using the extensive catalogues of variation in the founders (see Keane et al., 2011 [ 7]) it is possible to impute the variants into each CC lines and test for association [ 26].
We used the NHGRI catalogue of GWAS, a comprehensive database of all published GWAS [7], [8].
We used the NHGRI catalogue of published GWA studies[44], a comprehensive database of GWA investigations to identify GWA studies on cancer phenotypes published as of May 20 , 2008
We used the RefSeq catalogue of protein coding genes for our analysis [ 23].
Additionally, we used the COSMIC (catalogue of somatic mutations in cancer) to check our sequencing data for mutations that have already been reported elsewhere.
Table 1 shows a list of the studies used to compile the catalogue of plates.
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