Sentence examples for using the branch score from inspiring English sources

A Perl script (Phylip_tree_distance.pl) was used to run the PHYLIP treedist program to determine the distance between the RA and MLST trees using the Branch Score Distance [33].

The highest likelihood tree from each An partition and its corresponding Bn partition were then compared using the branch score metric [ 79] and partition metric [ 80] as implemented in the treedist executable of Phylip v.3.69 [ 81].

The degree of conservation of a word within the gene family is scored using the branch length score (BLS).

These are sets of TFBSs that are predicted to be gained (or lost) at the same inner node of the species tree, and they are then scored using the branch length score as proposed by [ 41].

Putative motifs are exhaustively enumerated as words over the IUPAC alphabet and screened for conservation using the branch length score.

For every word, the degree of conservation in each gene family is quantified using the branch length score (BLS).

Branch lengths were transformed using the branch length method of Grafen [ 87].

Using the branch-sites methods each individual branch was analysed.

Using the branch-site model, positively selected signals were detected in fifteen branches.

We used two related measures for tree comparison, the Robinson-Foulds (RF) score [25] and the branch score (BS) [26].

For every U2 intron of T. spiralis classified with the method from Sheth et al. we used the branch site which achieved the best score with a GT-AG U12 PWM.