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Branch lengths were transformed using the branch length method of Grafen [ 87].
An optimal decision is made by using the branch and bound method [31]; however, this method's complexity increases exponentially with the required number of features to be selected.
In this study, a computational method has been developed using the branch and bound method.
We also formulated a mixed integer multiobjective optimization model for the proposed schemes and found the global solution using the branch and bound method (Section 3).
We tested for evidence of positive selection using the branch-site method implemented in PAML version 4 [ 77], as previously described [ 78- 80].
(3) Species were also grouped into GA-binders or non-binders and compared using the branch-sites method, as such comparisons can improve the power of analysis if the underlying biological assumption to group the branches is sound [ 18].
A test of positive selection using the branch-site method as well as determination of interacting partners and sub-cellular localization for each paralogous protein will further elucidate the existence of sub- or neo-functionalization.
Read line and load data of the system and solve the feeder line flow for the system using the branch current load flow method.
The algorithm to find the optimal locations for DG placement using LSF is explained in detail in the following steps Step 1 : Read line and load data of the system and solve the feeder line flow for the system using the branch current load flow method.
Using the branch-sites methods each individual branch was analysed.
However, using the branch-sites methods which allow evolutionary rates to vary across the tree did show some interesting findings.
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