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We developed Resource Description Framework (RDF -induced InfluGrams (RIIG) – an informatics formalism to uncover complex relationships among biomarker proteins and biological pathways using the biomedical knowledge bases.
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Although using the biomedical literature as a knowledge source seems intuitive [ 51, 58, 59], certain limitations exist: the literature is indexed based on titles, abstracts and keywords, not on full-text [ 60, 61].
MeSHOPs provide a quantitative overview of the biomedical knowledge associated with an entity of interest through the indexed biomedical terms.
Ontologies are currently developed to address highly specific domains or subdomains in the biomedical knowledge universe.
One should note that using a human expert to validate the dual mining method usually means the expert is using sources of biomedical knowledge extra to PubMed.
Boshuizen described how the resulting 'shock of practice' is associated with a temporary decrease in students' ability to properly use biomedical knowledge in clinical reasoning (Boshuizen 1996).
Boshuizen [ 6] highlighted that the "shock of practice", a crisis experienced by many medical students on first entering the clinical workplace, is marked by a temporary decrease in their ability to properly use biomedical knowledge in clinical reasoning.
Understanding the role of neuropeptides in human and livestock traits using the pig as biomedical model requires a comprehensive knowledge of the neuropeptide complement in the recently released pig genome (SScrofa 10.2v18, [ 16]).
SemRep, a natural language processing application originally designed for biomedical texts, uses the knowledge sources provided by the Unified Medical Language System (UMLS©).
Database URL: http://www.nactem.ac.uk/Argo Text mining (TM) is used increasingly to support biomedical knowledge discovery (1 3), hypothesis generation (4) and to manage the mass of biological literature (5).
UML has increasingly been used for the representation of biomedical knowledge [ 51- 55].
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com