Sentence examples for using the bioconductor program from inspiring English sources

The eQTLs were determined using the Bioconductor program (27) GGtools 3.0 written by Vince Carey.

Data quality checks were performed using the Bioconductor Lumi package for R statistical programming environment.

All statistical analyses for network constructions were performed in the R statistical programming environment using the Bioconductor open source package [ 51, 52].

Data processing and identification of differentially expressed genes was carried out in the R environment for statistical computing and programming [ 64] using the Bioconductor package bundle [ 65], Limma [ 66], aroma package [ 67] and the kth-package [ 68].

All these analyses were performed using the Bioconductor Package run in the R statistical programming environment [ 42].

Gene expression data were analyzed using the BioConductor package 'LIMMA' (version 3.6.1) in the R statistical programming environment (version 2.12.0).

The OTU-table created by qiime after denoising and chimera checking was imported into the statistical programming language R [ 18] using the Bioconductor [ 19] package phyloseq [ 20].

Affymetrix chip CEL files were imported into the statistical programming language R and analyzed using the Bioconductor package "affy" (Gentlemen et al. 2005).

The resulting mapping files (bam) were imported into the statistical program R (R Development Core Team 2006) using the Bioconductor package Rsamtools [ 134].

Official gene symbols for probe sets were obtained using the Bioconductor annotation database mouse4302.db.

All subsequent analysis was performed using the Bioconductor software environment.