Sentence examples for using the best template from inspiring English sources

Different models of LdAdk were built using Modeller and SWISS-MODEL using the best template.

In order to study the structural and conformational variability between the RF protein families, selected members of the RF superfamily were modeled using the best closed PDB templates structures using SWISS-MODEL, a protein structure homology-modeling server, via the ExPASy web server [40] [42].

Hence, we used bioinformatics methods to predict and analyze the tertiary structure of 44 selected rhizobial Glbs (i. e. those representative of major rhizobial Glb clades identified in this work (see Figure 2 and Table S2)) using the best structural homologs as templates (Dataset 3).

It then proceeds to generate homology models using the best possible set of diverse templates that display at least 30% sequence identity.

Yet in the second set of simulations, I used the true best template to investigate the various alignment options and found that the alignments were as good as the SILVA alignments (Tables 2, S3, and S4).

Note that the best template used to build the model corresponds to the original structure in the drug target complex only in 153 cases, whereas in all the other cases, the best template was a different structure.

Finally, we use the best solutions as templates for MC-Sym (Parisien and Major, 2008) and generate 3D structures.

Rab1A (PDB 4FMC_D) was the best template found using CE algorithm (Shindyalov and Bourne, 1998) (3.6 Å root mean square deviation).

The allocation algorithm from Fig. 9 also uses memoization in order to store the best template selections for each different sequence of elements.

It would be argued that the best template will be excluded by the use of Chain Length Indexing.

After the best template was determined, fold consistency within the template candidates was considered using TM-score and SCOP database to select additional template structures among the template library.