Sentence examples for using the beb test from inspiring English sources

As shown in table 2, the LRT gave a significant result, with six sites detected to show d N/d S > 1 significantly having high posterior probabilities using the BEB test (Yang et al. 2005).

Posterior probabilities (Qks) were calculated using the BEB method [ 65].

M2a and M8 identified one and seven sites, respectively, with an ω > 1 using the BEB method (Table 1).

Using the beb method we were able to highlight 17 and 32 sites in branches D1a and D1b, respectively.

Up to seven amino acid sites were identified as sites of positive selection using the BEB analysis in MAT1-1-3 but oney one site had strong support with BEB posterior probability > 95% in model M8 (see Additional file 3).

Only sites that are found to have a posterior probability (PP) > = 0.90 using the BEB method are reported, therefore reducing the probability of false positives [ 48].

The posterior probabilities associated with specific codons falling into a site class affected by positive selection were calculated using the BEB method, described by Yang et al. [ 105].

Using the beb method, we were able to detect 6 and 40 sites under positive selection in D2a and D2b, respectively.

Using the beb (Bayes empirical Bayes) method we identified 26 and 22 sites in branches D1a and D1b respectively, with high posterior probability to have evolved under positive selection.

There were no individual sites using the BEB calculation that had a PP > 0.90 of being positively selected under the CladeC model, therefore we applied modelA to gain more site-specific information.

Acceleration in evolution rate was detected on the D1b branch, with about 9% sites under positive selection (Table I – dbe) and 5 sites were significant using the beb method.