Sentence examples for using the beb method from inspiring English sources

Posterior probabilities (Qks) were calculated using the BEB method [ 65].

M2a and M8 identified one and seven sites, respectively, with an ω > 1 using the BEB method (Table 1).

Using the beb method we were able to highlight 17 and 32 sites in branches D1a and D1b, respectively.

Only sites that are found to have a posterior probability (PP) > = 0.90 using the BEB method are reported, therefore reducing the probability of false positives [ 48].

The posterior probabilities associated with specific codons falling into a site class affected by positive selection were calculated using the BEB method, described by Yang et al. [ 105].

As described above, the posterior probability that each site falls into the positively selected class was calculated using the BEB method.

Using the beb (Bayes empirical Bayes) method we identified 26 and 22 sites in branches D1a and D1b respectively, with high posterior probability to have evolved under positive selection.

Up to seven amino acid sites were identified as sites of positive selection using the BEB analysis in MAT1-1-3 but oney one site had strong support with BEB posterior probability > 95% in model M8 (see Additional file 3).

When the LRT indicated positive selection, the BEB method was used to calculate the posterior probabilities that each codon is from the site class of positive selection under models M3 and M8 [ 72].

In PAML the NEB method [25], [39] and the BEB method [42] are used to identify sites under positive selection.

Approximately 20%and35%5% of sites evolved under positive selection in branches D1a and D1b, respectively, while the beb method did not allow us to pinpoint any particular residue.