Sentence examples for using the beb calculation from inspiring English sources

There were no individual sites using the BEB calculation that had a PP > 0.90 of being positively selected under the CladeC model, therefore we applied modelA to gain more site-specific information.

Posterior probabilities (Qks) were calculated using the BEB method [ 65].

The posterior probabilities associated with specific codons falling into a site class affected by positive selection were calculated using the BEB method, described by Yang et al. [ 105].

M2a and M8 identified one and seven sites, respectively, with an ω > 1 using the BEB method (Table 1).

Using the beb method we were able to highlight 17 and 32 sites in branches D1a and D1b, respectively.

Up to seven amino acid sites were identified as sites of positive selection using the BEB analysis in MAT1-1-3 but oney one site had strong support with BEB posterior probability > 95% in model M8 (see Additional file 3).

Only sites that are found to have a posterior probability (PP) > = 0.90 using the BEB method are reported, therefore reducing the probability of false positives [ 48].

Using the beb method, we were able to detect 6 and 40 sites under positive selection in D2a and D2b, respectively.

Using the beb (Bayes empirical Bayes) method we identified 26 and 22 sites in branches D1a and D1b respectively, with high posterior probability to have evolved under positive selection.

Acceleration in evolution rate was detected on the D1b branch, with about 9% sites under positive selection (Table I – dbe) and 5 sites were significant using the beb method.

While the parameter estimates under M2a suggested a small proportion of sites with ω>1, the BEB calculation [17] detected no sites with high posterior probability of being under positive selection (P<0.6 for all sites).