Sentence examples for using the beadstudio software from inspiring English sources

Differential methylation analysis (DMA) was performed using the BeadStudio software (version 3).

The resulting genotypes were visualized using the BeadStudio software package version 3.1.4 (Illumina, Inc).

All basic expression data analysis was carried out using the BeadStudio software 3.0.

Significant differential expression was calculated using the Beadstudio software by applying multiple testing corrections using Benjamini and Hochberg False Discovery Rate (FDR) [28], [29].

The raw intensity data was obtained from the scanned arrays using the BeadStudio software version 1.4.02 (Illumina, San Diego, CA, USA), using the default probe summarization and background substraction methods.

Genotypes were scored using the BeadStudio software.

Background correction, filtering of data and quantile normalization were done using the BeadStudio Illumina software.

Cubic spline-normalized probe intensity data, together with detection P-values, were obtained using the BeadStudio 3.1 software (Illumina).

> -wrap-foot> Calling SNP genotype data using the BeadStudio genotyping software generally produced three clear clusters, i.e. the AA homozygote, BB homozygote and AB heterozygote.

The data were first analyzed using the BeadStudio Methylation software (Illumina Inc., La Jolla, CA), and then a supervised cluster analysis with correlation metrics and average linkage was carried out using the open-source program Cluster 3.0.

A second genome-wide association scan using 550 000 SNPs (Infinium HumanHap550-Duo BeadChip, Illumina) was carried out in 874 English cases of severe AMD (geographic atrophy, choroidal neovascularization) compared with 418 disease-free controls and scored using the BeadStudio v.3 software (Illumina).