Sentence examples for using the automatic annotation from inspiring English sources

Hierarchical information of the sequences from annotated transcriptome mapped to the KEGG pathways maps using the automatic annotation tool KAAS [ 54 ].

Using the automatic annotation server KAAS [ 59], L. crispatus CDSs were assigned with EC numbers describing enzymatic activity.

Functional annotation for these contigs was performed using the automatic annotation tool Blast2GO (Conesa and Gotz, 2008).

Using the automatic annotation server KAAS [ 59], we were able to assign EC numbers to the members of 1,320 ortholog groups.

RAC also offers an additional function that allows users to submit sequences containing cassettes or arrays for annotation using the automatic annotation system Attacca.

Retained candidate genes were annotated with the GO and Kyoto Encyclopedia of Genes and Genomes (KEGG) database [ 21] using the automatic annotation tool Blast2GO [ 83] with a cutoff e-value of 1e − 6.

In addition to the annotations described above, we used the Automatic Annotation Server provided by the Kyoto Encyclopedia of Genes and Genomes (KEGG) for all UniSeqs using the single-directional best-hit option.

bGO annotations were made using the automatic bioinformatics software Blast2GO.

During the annotation process, each olive EST was analyzed to address the functionality of newly identified genes using the KEGG automatic annotation server (KAAS- http://www.genome.ad.jp/tools/kaas/) which provides the functional annotation of genes based on sequence similarity comparisons against the genes within KEGG Genes database [ 44].

Total proteins from each of the 15 metagenomes were first annotated against the KEGG functional database79 using the KEGG Automatic Annotation Server80.

For completeness we automatically inferred individual metabolic pathways for all Candida species using the KEGG automatic annotation server (KAAS) [ 69].