Sentence examples for using the artemis tool from inspiring English sources

The final annotation of the BAC sequences was performed using the Artemis tool [58], and the comparison with the Nipponbare genome was accomplished using dot-plot alignments of the Dotter software [59].

Gene models were created and refined using the Artemis tool (Carver et al., 2012).

We further analysed the coding sequences using the Artemis tool [ 78] and manually re-annotated the genes of special interest.

Figure  2a shows a comparison of the BfR-CA-9557 BfR-CA-9557 BfR-CA-9557r C. coli genomesequence, clade 3 and RM4661, clade 1) using toe Artemis tother

The coding sequence of C. coli 76339 was further analysed using the Artemis tool [ 30] and manually re-annotated the genes of special interest.

We have manually curated the pseudogenes using the Artemis tool [ 15] aiming to avoid problems due to mutation error in homopolymer tracts often observed on pyrosequencing data.

For visualization of EST on the Æ. ægypti genome, we used the Artemis tool [ 174] after transforming the blastn output to a file compatible to Artemis using a program written in Visual Basic.

To further improve the reference genomes we mapped the RNA-seq data onto the RMP genomes and visually inspected the alignments using the Artemis Comparison Tool (ACT), a genome viewing tool [ 35].

Comparison with other previously sequenced strains using the Artemis Comparative tool (Carver et al. 2005) was useful for correct orientation of different contigs, due to the genomic stability demonstrated by these genomes.

Alignments were performed using the Artemis Comparison Tool (ACT) [80].

Schematics of the aligned genomes were generated using the Artemis Comparison Tool [130].