Sentence examples for using the alignment proposed from inspiring English sources

The putative TM segments of CLR were aligned against the TM domains in bovine rhodopsin (inactive, PDB 1U19) and opsin (active, PDB 3DQB) using the alignment proposed by Vohra and co-workers [30].

A user/annotator is in control of the alignment process and confirms, rejects or modifies the alignments proposed by ILink.

Fig. 14 Schematic diagrams presenting a pre-etching and alignment accessory pattern on a wafer and b the methodology of subsequent mask alignment using the technique proposed by Chang and Huang [107] Reprinted from [107], © 2005 Springer, reproduced with permission.

The CIGAR string of the BLAT alignment is calculated using the method proposed by Heng Li (https://github.com/lh3/samtools-legacy/blob/master/misc/psl2sam.pl).

In the pattern validation step of MixTaR (Step II. in Figure 1), we compute the maximum semi-global alignment score between the patterns and the long reads using the overlap alignment method proposed by the library SeqAn [ 40].

The reduction quality was primarily categorized as good, acceptable, or poor using the method proposed by Baumgaertner et al. [ 19], including fragment alignment and displacement.

First, we estimated the probabilistic symbol alignment confidence score using the proposed message-passing scheme.

While AFLP have initially been proposed as input data for the HET, it is conceptually similar to use the alignments of several nuclear genes.

For the E.coli/Shigella genomes we used the tree proposed by [ 53] as reference which is based on concatenated alignments of the 2034 core genes.

The first run was started using the UCSC alignment to initialize the Markov chain, while the second was initialized with a random alignment proposed by BigFoot.

Alignments are navigated using the Blixem alignment viewer (22).