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Thus, 16% (994/6,371) of predicted alternative splice forms can be detected using the Affymetrix array.
For each candidate gene, all SNPs analysed using the Affymetrix array were selected (a total of 1079 SNPs, full data in supplementary data file S2), and the allele frequencies calculated across the South African populations.
The co-expression analysis on some of the P450 genes was performed using the Affymetrix array datasets.
Moreover, various unique cases suffering from cancer are currently being analyzed using the Affymetrix Array 6.0 microarray technology to identify copy number changes and homozygosity stretches.
We also examined the Spearman correlation between p-values calculated using the Affymetrix array data with each of the six testing methods and qRT-PCR data for the 47 qRT-PCR assayed genes.
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The rest of the candidate genes did not show significantly different levels of expression using the Affymetrix arrays, and showed differences in expression in opposite directions on the two platforms.
To extend the expression analysis of soybean MYB-related gene, we used the Affymetrix array data housed within the PLEXdb.
In this paper, we present and assess our method to map and annotate gene expression arrays, using the Affymetrix GeneChip arrays as an example.
These samples have been genotyped using the Affymetrix 500K array.
RNA mapping experiments using the Affymetrix tiling array were performed as previously described [38].
Microarray data sets were analyzed using the Affymetrix tiling array software (TAS).
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