HIV-1 subtype was determined using the REGA HIV Subtyping Tool 2.0 [86] and the Recombinant Identification Program: RIP 3.0 [87] at Los Alamos (http://hiv-web.lanl.gov/content/index).
We also used the Rega scores without the suggestions about weighting of scores for boosted PI drugs and NNRTI.
For HIV, various versions of the Stanford algorithms (HIVdb, Liu and Shafer, 2006), the Rega algorithms (Van Laethem et al., 2002) and the ANRS algorithms (Meynard et al., 2002) are implemented.
Deisotoping was performed using the MaxEnt3 algorithm.
In short, "this estimation can be done efficiently using the Flajolet-Martin algorithm".
"I shall also be using the phallus as an algorithm," Lacan announces.
The program uses the Blowfish encryption algorithm, which offers strong data protection.
A program uses the algorithm to process data and create a preliminary model.
The nucleotide sequences generated were used for subtype analysis, using the National Center for Biotechnology Information HIV-subtyping tool (http://www.ncbi.nlm.nih.gov/projects/genotyping/formpage.cgi) and the Rega HIV-1-subtyping tool version 2.0 (http://www.bioafrica.net/rega-genotype/html).
The baseline HIV-1 genotype was successively processed by calculating the GSS using the latest available version from 3 interpretation systems (Rega 8.0.2, ANRS 2009.07, and HIVdb 6.0.9) with respect to the associated cART.
