Sentence examples for using the Python package from inspiring English sources
The trimmed reads were randomly subsampled using the python package HTSeq for a rarefaction curve analysis.
Random Forest was implemented using the Python package scikit-learn.
Macau was implemented using the Python package Macau.
Power law distributions were fitted using the Python package powerlaw [27].
We generated a log-scaled two-dimensional histogram of r values vs. distance using the python package matplotlib v1.4.0.
The shortest path length for integrated global protein-protein interactions [ 27] was calculated using the Python package networkX.
For this purpose we have used the Python package tweetstream to retrieve tweets related to the Sandy hurricane, hitting large parts of the Caribbean and the Mid-Atlantic and Northeastern United States during October 2012.
We used the Python package "sklearn" to implement this procedure.
The n-grams processing uses the Python package NLTK — an open source Python set of modules, linguistic data and documentation for research and development in natural language processing and text analytics [ 13].
The parameters used were a mate-inner-dist of 70, mate-std-dev of 100 and splice-mismatches of 2. Raw counts per gene were determined by using the Python HTSeq package (http://www-huber.embl.de/users/anders/HTSeq). Normalization and differential expression analysis was performed using the Bioconductor/R package DESeq (Anders and Huber, 2010).
The heatmap, created using the Python visualization package matplotlib [47], is constructed as a matrix; rows and columns map to individual columns of the dataset, and the intersecting elements to their combination.
