Sentence examples for using the Modeller software from inspiring English sources

Afterward, the target-template alignments were computed in the last step, with an e-value of ≤ 0.00001 to build the model structures using the MODELLER software [ 17, 18].

The cTF model was built using the MODELLER software (version 9.8), 26 a multi-template modelling approach was used so that good resolution structures of Tm dimer (PDB ID: 1IC2, 2B9C, 1KQL) and the full-length Tm structure (PDB id: 1C1G) was used simultaneously.

Models were generated using the Modeller software.

In order to aid and visualize the interpretation of the MSA, a 3D model of HiGH61A was made using the MODELLER software using the TtGH61E structure as template (41%% sequence identity and 3%% gaps).

For convenience of the simulation, we built a model of the SS complex without symmetry and a hexameric model of DD imposed with a C6 symmetry using the Modeller software package (Eswar et al. 2006).

15 Loops that are not present in the crystal structure were added using the MODELLER software.

Modeling was carried out as previously described in [46], [47] using the MODELLER package [48].

After threading, full atomistic models of the Rev protein were generated from the template and alignment obtained from the threading studies using the MODELLER [29], [30], and NEST software tool incorporated in JACKAL 1.5 [49].

The model has been designed using the modeller which is the homology modelling process.

Alignments for the model, generated using the Modeller align function, were altered manually to provide the best representative alignment.

Models where generated automatically using the MODELLER program (modbase.compbio.ucsf.edu/ModWeb20-html/modweb.html).