Sentence examples for using the MetaCyc database from inspiring English sources

Each pathway was examined using the MetaCyc database as references [71].

Assignment of metabolic pathways was performed using the MetaCyc database [ 76], with permission.

Expressed genes that showed no significant similarity to Arabidopsis genes but to enzymes from other organisms were assigned to a pathway using the MetaCyc database [ 47].

Proteins were assigned to their corresponding pathways using the MetaCyc Metabolic Pathway Database [ 41].

The METACYC database is not used as a primary data source.

To evaluate concordance between pathways predicted using environmental sequence information and reference pathways in the MetaCyc database we developed a weighted taxonomic distance (WTD) algorithm.

The human metabolome database (HMDB; www.hmdb.ca), the MassBank high resolution mass spectral database (www.massbank.jp), the NIST/EPA/NIH mass spectral library, and the MetaCyc database (http://metacyc.org) were used with a mass tolerance ranging from 0.1 to 0.01 Da for the metabolite searches and identifications.

The metabolic pathways were examined using KAAS (KEGG Automatic Annotation Server) [ 180] and the MetaCyc database [ 181].

Another possible way to reduce false-positives in metabolic reconstructions is to categorize pathways in the MetaCyc database on the basis of taxonomy and then to use this information for the computational reconstruction.

EC numbers and protein coordinates were used as input to the PathwayTools Pathologic suite V17.0 [ 77] and pathways were predicted based on the MetaCyc database [ 52].

The MetaCyc database and PathwayTools software suite were chosen for this work because they are widely used and easy to implement.