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Regional association plots were generated using the LocusZoom tool (38).
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To indicate the relative position of above 6 SNPs and the other SNPs across the NRXN1 gene download from the HapMap stage II dataset, we then further constructed the regional LD plots using the LocusZoom (http://csg.sph.umich.edu/locuszoom/) [ 16].
We used the LocusZoom software (23) to generate plots of the splicing QTL P-values against genomic position, colored by LD r as calculated from the European population in 1000 Genomes.
The regional association plot was generated using the online tool LocusZoom (Pruim et al. 2010).
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