Sentence examples for using the ISFinder database from inspiring English sources

Insertion sequence (IS) elements were identified and classified by using the ISFinder database [52].

Insertion sequence (IS) elements were identified using the ISFinder database [52].

Insertion Sequences (ISs) were identified and classified using the ISfinder database (http://www-is.biotoul.fr) as described by Siguier and coworkers [19].

Insertion sequences were classified using the ISfinder database [ 41].

Insertion sequences were characterized using the ISFinder database (http://www-is.biotoul.fr/) [ 82].

The ISs were identified and classified using the ISfinder database [ 24].

We used the ISFinder database (Siguier et al. 2006) to retrieve bacterial sequence for the Merlin phylogenetic analysis.

Then, all MITE families were used against the ISfinder database http://www-is.biotoul.f/is.html[ 37], RepBase database (version 14.11) [ 38] and NCBI nr database respectively to find known families.

Potential IS elements were identified using the BLASTN program (no low-complexity filtering), by querying genome sequences using the ISFinder tool [ 70] in the IS database and querying flanking regions of the draft genome contigs against the NCBI 'nt' database.

Insertion Sequence (IS) elements in the P. putida genomes were identified using the ISfinder tool (Siguier et al. [2006]; Varani et al. [2011]).

The number of IS elements identified in Y11 genome using the ISfinder [ 48] was slightly higher than that in 8081 (about 64 full length IS elements).