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PCA plots were generated using the Genesis tool [19].
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To identify groups of co-expressed genes, we use the k-means method [ 71, 72] with Pearson's correlation coefficient using the Genesis software tools [ 73] to cluster contigs that contain at least five ESTs.
Cluster analysis of microarray data was computed using the Genesis software [55], [56].
All clustering operations were performed using the Genesis software [ 66].
The heat maps derived from the microarray analysis were generated using the Genesis program [ 90].
Hierarchical clustering was performed using the Genesis software (Sturn et al, 2002).
K-means gene clustering was performed using the Genesis software package [ 96].
Heat map generation was carried out using the Genesis software package.
Simulated gene-trees were created using the Genesis package of Mesquite vers.
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