Sentence examples for using the GOMiner tool from inspiring English sources

Functional enrichment analysis was performed using the GOMiner tool [ 35].

Then GO terms enriched in these groups were identified using the GoMiner tool [ 59].

We also carried out the gene ontology (GO) enrichment analysis using the GOMiner tool [ 23].

Genes that were differentially expressed (padjusted < 0.05) by each compound were subjected to Gene Ontology enrichment analysis using the GOMiner tool with 1,000 permutations.

Ontological analyses were then performed using the GOMiner algorithm [Zeeberg BR, Feng W, Wang G, Wang MD, Fojo AT, Sunshine M, Narasimhan S, Kane DW, Reinhold WC, Lababidi S, Bussey KJ, Riss J, Barrett JC, Weinstein JN (2003) GoMiner: a resource for biological interpretation of genomic and proteomic data. Genome Biol 4(4):R28].

Each list of up-regulated and down-regulated genes was analyzed using the GOminer website (http://discover.nci.nih.gov/gominer/) to define enrichment in several key biological functions.

Pathway analysis of differentially methylated genes was conducted using the GoMiner™ package and the default settings.

Next, we analyzed the differential distribution of the 1000 most significantly associated probes using the GoMiner™ algorithm.

Fisher exact P values were generated using the GoMiner software (Zeeberg et al. 2003) with multiple testing correction.

For all genes identified as differentially abundant in the transcriptome analysis, ontologies were obtained using the GoMiner software [ 59] and complemented when necessary with information from the literature.

The resulting gene lists were examined for biological information in the context of Gene Ontology by using the GoMiner program package (Zeeberg et al, 2003).