Sentence examples for using the European snp from inspiring English sources

To investigate whether these putative novel SNPs were replication or secondary signals, we performed conditional analysis using the European SNP as covariates similar to the method described above.

First, we imputed HLA-DQA1 and HLA-DQB1 alleles from the SNPs using the R package HIBAG 1.2.3 [ 43], using the European hg18 HLA4 reference dataset.

Using the European 1000 Genomes genotypes as reference (population codes: CEU, FIN, GBR, IBS, TSI), the gene region for CYP2B6, length 41.9 kb, contained 128 SNPs with MAF > 5%.

Using the European Consensus on Grading [ 4].

To investigate the possible existence of a secondary signal, we performed a stepwise conditional analysis using the previously reported European SNPs as covariates.

A total of 3192 European individuals were genotyped at 500,568 loci using the Affymetrix 500K SNP chip.

Using the same 100 SNP windows, we calculated π and d.

a Distribution of 260 informative SNPs across 12 rice chromosomes detected using the 384-SNP assay (OPA 6.1) (left) and 1868 polymorphic SNPs using the C6AIR (right).

We searched for P-values for breast cancer risk association of SNPs in the GAME-ON meta-analysis of breast cancer risk case control studies (27); if data for the SNP of interest were not available, we used the SNP with the highest r with the index SNP in the European population in 1000 Genomes.

A total of 158 European winter-type B.napus inbred lines were genotyped with 21,623 unique, single-locus single-nucleotide polymorphism (SNP) markers using the Brassica 60 K-SNP Illumina® Infinium consortium array.

SNP analysis of these 6 extractions were compared to previously analysed European SNP data using the same PCR assays and were found to be the same.