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japonica [ 40] using the CleaveLand software [ 41].
japonica using the CleaveLand software [ 56].
japonica [ 46, 53] using the CleaveLand software [ 56] with default parameters.
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Then, clean degradome data were processed using the CleaveLand pipeline [ 16] (http://axtell-lab-psu.weebly.com/cleaveland.html).html
Targets of miRNAs and phased small RNAs were identified using the CleaveLand pipeline [ 45].
These mappable reads were then used for target gene identification using the CleaveLand pipeline as described [ 43, 45].
After computational analysis using the Cleaveland pipeline [ 24], we identified a total of 183 potential targets of 53 miRNA families in five different seed developmental stage specific degradome libraries.
Japonica [ 40] using CleaveLand software [ 41] with default parameters.
Data were analyzed using the instrument software.
Analysis was done using the manufacturer software.
Data were graphed using the Prism software.
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using the moe software
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using the amira software
using the trinity software
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using the spss software
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using the sas software
using the arcgis software
using the metamorph software
using the mev software
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using the bowtie software
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