Sentence examples for using the CASTp server from inspiring English sources

The substrate binding site was predicted by using the CastP server [34].

The cavity was analysed using the CASTp server (Dundas et al, 2006).

For instance, in the case of the InhA_wt FFR model, and using the CASTp server [ 35], the snapshots at 1.0 ns and 1.5 ns have both 1,559 Å and 1,955 Å, respectively.

So we used the CASTp server, an online tool that locates and measures pockets and voids on 3D protein structures [39].

The active site prediction for the model was performed by using the CastP [34] server and the prediction having the largest area was selected as the best active site.

Cavities were detected with the CASTp server using the default probe size (1.4 Å).

The cavity volumes, as calculated on the CASTp server, are, respectively, 123Å and 111 Å in the BidBH3mini BaxΔC26 and the BimBH3mini BaxΔC26, similar in size to the BidBH3 BaxΔC21 cavity of 140Å.

The cavity in the structure was analyzed using the web server CASTp [32] and DALI [33] was used to identify structures that share similarity with SMU.440.

The structure was then checked using the WHATIF server [30].

This database was built using the web server, Apache HTTP, along with the database server, SQL server.

The database was implemented using the MySQL server.