Sentence examples for using the BioCyc framework from inspiring English sources

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BioCyc is a family of databases built using the BioCyc Framework.

Databases using the BioCyc framework typically contain between a few frames and several thousand frames.

Lower costs in genomic sequencing and improved methods of generating computationally predicted functional annotations has led to the development of many model organism databases using the BioCyc framework [ 1].

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Similarly, of the 204 host-associated bacteria that were evaluated using the BioCyc database, 168 were found to contain a complete shikimic acid pathway using both BioCyc and HMM searches, with 23 additional complete pathways detected using BioCyc and 12 additional complete pathways detected by the HMM search (Additional File 8).

Similarly, to obtain a gene set using the BioCyc database, the input for the same metabolite is "L-arginine".

In response to this changing research scenario, the CycADS annotation database system allows easy and automated annotation integration over time using the BioCyc powerful metabolism reconstruction and visualization tools, thus complementing the Pathway Tools software and BioCyc Pathways/Genome Databases (PGDB).

Finally, we employed the same protocol using the BioCyc database (http://biocyc.org/) and a 60% identity threshold to retrieve cyanobacterial outgroup sequences from the Prochlorococcus marinus and the Synechoccus genome sequences.

The BioCyc framework supports annotating frames with alternate identifiers, such as those which are commonly used in literature to refer to genes, proteins, and other biological objects.

The BioCyc framework provides methods to credit an author or organization for frame edits.

CycTools allows users to provide curator information which is stored in the BioCyc framework during the import process.

While the Lisp-format supports the import of these data types, it requires users to have an understanding of the Lisp data structure implemented in the BioCyc framework and is not easily converted to other standard formats.

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