Sentence examples for using the Berendsen algorithm from inspiring English sources

The isotropic pressure coupling using the Berendsen algorithm was applied with a reference pressure of 1.0 bar (Berendsen et al. [1984]).

Temperature was maintained using the Berendsen algorithm (35).

Temperature is maintained via coupling to an external bath using the Berendsen algorithm.

Water, lipid and peptide systems were coupled separately to temperature baths with 323 K for the DPPC using the Berendsen algorithm with a time constant of τ T = 0.1 ps.

All simulations were carried out in the isobaric-isothermal (NPT) ensemble with an external isotropic pressure of 1 atm using weak coupling to a pressure bath [43] and a temperature of 293 K (which is the reference temperature of circular dichroism determinations) using the Berendsen thermostat algorithm with a 2 ps−1 collision frequency.

The constant temperature and pressure (300 K/1 atm) were maintained using the Berendsen coupling algorithm 17 with a time constant for heat-bath coupling of 0.2 ps.

Constant temperature of 300 K was maintained using the Berendsen weak-coupling algorithm with a time constant of 1.0 ps.

A 1 ns position restrained run in the isothermal isobaric ensemble was then performed using the Berendsen weak coupling algorithm.

In our simulations, the temperature was fixed using the Berendsen thermostat (Berendsen et al. 1984).

The system temperature was maintained by coupling to a heat bath at 300 K, again using the Berendsen method [54].

The temperature of the system was maintained by coupling the system to a heat bath at 300 K using the Berendsen method [54].