In all regressions, problem representations were coded using tables as reference categories.
Using these tables as a reference, we applied the "cai" program of the EMBOSS suite to calculate Codon Adaptation Indices for the repA, repB, and repC genes.
The microarray expression data were validated by real time quantitative reverse transcription PCR (qRT-PCR) of 12 gene transcripts in the four genotypes at each sampling time, using CYCLOPHILIN7 (CmCYP7) as a reference gene (Table 2; Additional file 4: Table S3).
Use an electronegativity table as a reference.
The reported sensitivities and specificities ranged from 73.1% to 98.3% and 85.7% to 100%, respectively, using microscopy as a reference standard (Table 5).
Then the genomes of the 14 Beijing clinical isolates from South Africa were sequenced in paired-end mode, using HN878 as a reference sequence (Table 2).
We next estimated the functional potential of mtDNA synonymous mutations by calculating the difference in CAI values before and after the occurrence of each identified nodal synonymous mutation (i.e., ΔCAI) using CYTB as a reference (supplementary table S5, Supplementary Material online).
The reflectance spectrums of bare silicon etched by solutions A and B with different post-etch treatments are shown in Fig. 2 and the AM1.5G-weighted reflectance in Table 1, using polished wafer as a reference.
These were calculated by using good scores as a reference (Table 5).
This column in Table 1 is used only as a reference, as this would be the ideal order in which the nodes should be located in case of sequential node localization (the node that is located with the smallest error should be located first, then it becomes a reference for the other nodes, and so on).
In the adjusted model there were no statistically significant differences in the PTX rate from 1993 to 2000 using year 2000 as a reference year, Table 4.
