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The tree is rooted using sequences from the phylum Deferribacter as the outgroup.
For bCRKs and vCRKs separate analyses were carried out using sequences from the five species used in synteny analyses (Arabidopsis thaliana, Amborella trichopoda, Oryza sativa, Solanum lycopersicum, and Zea mays).
The phylogeography of Coreoperca whiteheadi was studied using sequences from the mitochondrial cytochrome b (cytb) gene and first intron of the S7 ribosomal protein gene.
To investigate the large-scale gene expression in different tea plant clones, a custom oligonucleotide microarray was developed using sequences from the RNA-seq study to design the probes because a commercial array is unavailable for the tea plant.
The same general topology was also found using sequences from the ENCODE consortium [18], [39].
Phylogenetic analyses were performed using sequences from the NS5B and E2 regions with the Maximum Likelihood, Neighbor Joining and Parsimony methods.
Similar(32)
Using sequence from the hookworm expressed sequence tag project, specific primers were designed and used to amplify Ac-api-1 from A. caninum infective L3 cDNA by PCR.
This was illustrated by the generation of a PWM using sequence from the RpZRE3-promoter-18 data-set (Figure 4), which revealed negligible sequence conservation outside of the core element.
We have used sequences from the conserved regions of known omega-3-desaturases to design degenerated oligonucleotides and clone a cDNA encoding a plastidial omega-3 desaturase from sunflower (HaFAD7).
This reconstruction used sequences from the internal transcribed spacer (ITS) region, the external transcribed spacer (ETS) region, and the 5S non-transcribed region of nuclear ribosomal DNA.
We used sequences from the CK family as the outgroup to root the tree.
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