Sentence examples similar to using sequence alignment for genome assembly from inspiring English sources

Three commonly used sequence alignment programs: MegaBLAST, Blastz and PatternHunter were used to align a set of ovine BAC-end sequences against the equine genome assembly.

De novo genome assemblies of A. halleri and A. lyrata were used for assigning sequencing reads from polyploid individuals to their parental origins (see Supplementary Methods for genome assembly information).

SeqManPro (Lasergene 8.0, DNASTAR) was also used for sequence alignments containing BAC assembly consensus sequences and predicted gene sequences.

The reference genome used for sequence alignment was the Human Build 36.1 finished human genome assembly (hg18, Mar. 2006).

The reference genome used for sequence alignment was the human build 36.1 finished human genome assembly (hg18, March 2006).

A phylogenetic tree was constructed for the seven genomes and subgenomes (T. cacao, G. raimondii, G. arboreum, and the two subgenomes each from G. hirsutum and G. barbadense) by using coding sequence alignment of orthologs from these genomes.

Candidate genes were searched for in the cattle genome Btau_3.1 assembly using the sequence alignment tool BLAST [ 22] following the approach described by Southey et al. [ 18].

For alignment and annotation of the sequence reads, we used the bovine genome assembly Btau 4.0 ftp://hgdownload.cse.ucsc.edu/goldenPath/bosTau4/chromosomes/ as a reference source.

Putative amino acid sequences were used to guide nucleotide sequence alignments for the protein-coding genes.

Another possibility is that the lack of conservation that we observed at the functionally homologous enhancers is due to incomplete genome assemblies or to the algorithms we used for sequence alignment and the identification of conservation.

We used hg19 human genome assembly as reference genome for alignment.