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Alteration of selected color mutants in the six-gene cluster was screened by PCR using primers that covered the whole region.
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In order to determine whether both loci of BRK1 are expressed in P. collenchymatum and P. eurystomum, RT-PCR and quantitative Real-Time PCR (qPCR) were performed using primers that cover polymorphisms in the exon (Additional file 3: Figure S1).
RT-PCR was performed on transcripts from Pold1+/− and Pold1exo/+ ES cells using two primers that covered the full-length Pold1 coding region.
DNA sequencing was performed using overlapping primers that covered the overall L-PCR fragments.
The cDNA was then used as a template to PCR-amplify the coding exons (exons 2 17) using overlapping primers that cover the exon-exon junctions (see Supplementary Table 1 (S1) in the Supplementary Material available online at http://dx.doi.org/10.1155/2014/370538).org/10.1155/2014/370538
To further confirm this finding, primers that covered the SALL4 promoter region were designed and used to map the SALL4 binding sites more precisely.
Fosmids with full-length RGHs, identified by amplifying with primers that covered the full-length genes, were then sequenced from both ends using the Big-Dye Terminator v3.1 cycle sequencing kit (Applied Biosystems) following the manufacturer's protocol.
We designed a set of primers that covered the entire human CA9 mRNA.
The first amplification was carried out using the Access RT-PCR System (Promega) with 6 different pairs of oligonucleotide primers that cover the entire HIV-1 genome.
Complete integration of this gene construct was tested using primer pairs that cover the region from the 35S-promoter of the ATDs element to flanking genes (either rolC [at right border of T-DNA] or nptII [at left border of T-DNA], see Figure 5b).
The design of a primer that covers all species within the domain Bacteria is impossible [ 33].
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