Sentence examples for using prank from inspiring English sources

When translated into the absolute numbers, it means that in some cases using PRANK can boost the overall prediction performance of a method by up to 20% (the Improvement column) with respect to the absolute achievable maximum.

Using PRANK to rescore Fpocket outperforms both ranking methods on all datasets while for ConCavity predictions PRANK is outperformed only in individual cases by volume ranking on Astex dataset and PLB index on U B 48 datasets.

Alignment was done using PRANK [73], [74], and the program MEGA4 was used to construct a phylogenetic tree [75].

All sequence matches selected from the HMMSEARCH output were aligned using PRANK [25], except for the HAP family whose matches were aligned back to the HMM using the HMMALIGN program.

Sequences were aligned using PRANK (Löytynoja and Goldman 2005).

The sequences were aligned with our C. nuchalis sequence using PRANK ([ 79], Figure S1).

We used PRANK and GUIDANCE to align and clean the sequence clusters.

We used PRANK (version v.120716) for multiple protein sequence alignment, phylogenetic tree reconstruction using proml (phylip version 3.69) (fast mode, 100 bootstraps) and positive selection detection using codeml (PAML version 4.8) (nested models M1a/M2 and M7/M8, q-value <0.05).

Moreover, McGowen et al. used the program Muscle to align the genes, whereas we used Prank, a program that is reported to be a much more accurate aligner (Fletcher and Yang 2010).

To determine whether this is also the case for our DamID data, we used PRANK, a phylogeny-aware aligner [ 92, 93], to create multiple alignments of high-confidence orthologous sequences from each species with Dichaete binding intervals showing four-way binding conservation and those showing unique D. melanogaster binding.

The blurb on the the Toronto festival website for Where to Invade Next suggests Moore will again use prank-based journalism to satirise US foreign policy.