Sentence examples for using phylogenetic analysis of from inspiring English sources

In addition to using phylogenetic analysis of nucleotide sequences, it would be useful to include microsatellite loci or single nucleotide polymorphisms (Miller et al. 2007; Hohenlohe et al. 2010).

Here we describe a tool (RTclass1) designed for the fast and accurate automated assignment of novel non-LTR retrotransposons to known or novel clades using phylogenetic analysis of the RT domain protein sequences.

Under the most parsimonious scenario, the Plantae share a unique common branch that defines the point of entry of the primary endosymbiont [1], [5], [6], [7], although the monophyly of this group remains to be unambiguously demonstrated using phylogenetic analysis of nuclear genes [8], [9].

We attempted to corroborate this result using phylogenetic analysis of Tc1/ mariner transposase amino acid sequences.

Species boundaries were first established a posteriori using phylogenetic analysis of 246 Haemophilus genomes (Fig.  1).

Putative species were inferred based on 16S rRNA phylogenies (using 16S rRNA sequences extracted from the draft genome sequences) and confirmed using phylogenetic analysis of 31 protein sequences.

Lanyon (1994), Lanyon and Omland (1999), and Barker et al. (2008) used phylogenetic analysis of mitochondrial DNA (cytochrome b) to investigate the relationships within Agelaius blackbirds.

They used phylogenetic analysis of catalytic domains to build classification trees, used as a basis for the classification in 55 distinct subfamilies.

Additionally, we used phylogenetic analysis of partial β-tubulin gene sequences to confirm that the fungal isolates studied here represent a single species.

We have used phylogenetic analysis of related rickettsial genera to track the evolution of life-history traits associated with these bacteria.

Kinoshita [ 25] used phylogenetic analysis of two fungal yeast species and three animal species to conclude that orthologous relationships existed within fungal or animal septins, but not between fungal and animal septins making it impossible to compare model fungi and less tractable animals [ 25].