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We assess the role of reticulation at both levels in the genus Elymus L. of the wheat tribe Triticeae (Poaceae), using phylogenetic analyses of three unlinked, low-copy genetic markers.
The classification of LTR retrotransposons into distinct lineages and clades was done using phylogenetic analyses of their RT sequences [ 15].
We first decided to check for nearest relatives/neighbors in databases using phylogenetic analyses of the genes for the putative chitinolytic enzymes (based on predicted protein sequences).
Here we present additional gene arrangement data, and compelling evidence for instances of gene gain by LGT, using phylogenetic analyses of the BR and HR functional types and comparison to the RNA polymerase B' subunit phylogeny (RpoB').
Using phylogenetic analyses of whole nuclear genomes available for five grass species, we evaluate the size of C4-related gene families as well as the diversification of gene lineages in different subcellular compartments.
For the human orthologs of these genes (as defined by the International Xenopus laevis genome project using phylogenetic analyses of gene models during the course of annotating X. laevis genes), we extracted HumanNet gene gene linkage information and associated confidence scores (log likelihood scores; LLS).
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In order to address questions related to the evolutionary origin of V. longisporum, we used phylogenetic analyses of seven nuclear loci and a dataset of 203 isolates of V. longisporum, V. dahliae and related species.
After a large outbreak of YFV illness in Peru in 1995, we used phylogenetic analyses of virus isolates to reexamine the hypothesis of virus movement.
Our approach was to use phylogenetic analyses of four genes from two distinct taxon sets that included 61 newly-characterized sequences.
We used phylogenetic analyses of the full genome, the spike gene, and nucleocapsid gene of MERS-CoV NRCE-HKU205 to compare with the same genes of other human MERS-CoVs.
Using phylogenetic analyses to compare the transcriptomes of one C3 and three independently evolved C4 grasses, we showed that the same members of five gene families have been recurrently recruited for a function in the C4 pathway.
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