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Preservation was calculated using permutations of the preservation statistics and is represented by a Z-summary value.
A subsequent parallel analysis (using permutations of the raw data) revealed that a two-factor solution was optimal, which explained 54.12% of the variance (Table 3).
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The Shapiro Wilk test does not reject normality for most probesets, and spot checks using permutation of the genotype factor gave similar P-values.
For genes with scores greater than an adjustable threshold, SAM uses permutations of the repeated measurements to estimate the percentage of genes identified by chance, the false discovery rate (FDR).
SAM uses permutations of the repeated measurements to estimate the FDR, the percentage of genes identified by chance.
We have shown previously that the analytical q-value estimates are similar to those obtained using permutations of sample labels preserving the potential correlative structure between CpGs [ 31].
Pair-wise analyses using permutations of Mahalanobis distances produce the same pattern (Additional file 3: Table S1).
If we passed away, I can just imagine the kids sitting around the computer using permutations of our dog's name to try to determine the password to unlock it.
For each transcript SAM uses permutation of the data to identify a False Detection Rate (FDR) that balances type I and type II statistical error rates [ 63].
Significance is estimated using permutation of samples; however, the test statistic is standardized using gene scores calculated for all the genes in the study.
However, they used permutations of variables and distinguished between the first and the last variables.
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