Sentence examples for using multiple alignments of from inspiring English sources
The primers and probes were designed using multiple alignments of HPV-6 and HPV-11 partial E6 and E7 sequences that included prototypic and non-prototypic variants.
We also assessed the conservation pattern for these variants using multiple alignments of nine different mammalian mitochondrial sequences.
In this study, we examine ERK1/2 docking with HIV proteins from a drug design perspective using multiple alignments of HIV proteins classified according to subtype.
We located evolutionarily conserved regions by calculating the percent identity in all 2 kb regions spanning the Olig2 promoter using multiple alignments of seventeen species: mouse, rat, rabbit, human, chimp, macaque, dog, cow, armadillo, elephant, tenrec, opossum, chicken, frog, zebrafish, tetraodon and fugu.
Using multiple alignments of complete protein sequences (MACS), we inferred Tex19 and Sectm1 molecular phylogenies.
We employed Sprai [ 26], a new tool for correcting PacBio sequencing errors without other sequencers' reads using multiple alignments of raw PacBio reads.
The training data set was aligned using multiple alignment of RNAs (MARNA) 29 to obtain the consensus structure with 80% primary and secondary structure identity.
Recently, a new computational method was proposed that identified genome-specifically inserted sequences using multiple alignment of closely related genomes [ 12].
Variant prioritization tools, such as SIFT Ng and Henikoff, 2006, use multiple alignments of homologous proteins and judge a human variant damaging if it alters a highly conserved amino acid.
To reconstruct the evolutionary scenario for viral ligases, we used multiple alignments of the NAD-dependent and ATP-dependent ligases that included the respective protein sequences from the NCLDV, other viruses, and representative archaea, bacteria, and eukaryotes (see Additional File 1 and Additional File 2, respectively), to build maximum likelihood (ML) phylogenetic trees.
Using multiple alignment and sequence analysis of 1134 T-boxes, we determined the specifier codons and classified them into 18 amino acid specificity groups (Additional file 3).
