Sentence examples for using multiple alignment and from inspiring English sources
On simulated protein families, kmacs even outperformed a classical approach to phylogeny reconstruction using multiple alignment and maximum likelihood.
Using multiple alignment and sequence analysis of 1134 T-boxes, we determined the specifier codons and classified them into 18 amino acid specificity groups (Additional file 3).
Using multiple alignment and parsimony analysis of protein kinase catalytic domain sequences, the yeast protein kinases were categorized into subfamilies based on structural relatedness.
The automatic clustering method implemented in the program can distinguish between orthologs and paralogs without using multiple alignments and phylogenetic trees [ 16, 17].
Comprehensive bioinformatics analyses of all publicly available full-length NA sequences using multiple alignments and Shannon entropy were conducted to identify conserved sequences in all influenza A and B viral NA [ 1].
Using multiple alignments and secondary structure predictions, we define the catalytic core of these enzymes to contain a novel α+β scaffold with 6 conserved acidic residues and 4 basic residues.
Indeed, these studies generally consider all contacts in a large sphere (typical distance cut-off of 12 Å between Cβ atoms), whereas we focus here on the mean local non-trivial neighborhood of a position within both kinds of regular secondary structures (α-helices and β-strands) using multiple alignments and a short distance cutoff of 7 Å between Cα atoms.
It uses multiple alignments and a merging process in an attempt to resolve a given read's origin.
Our study is not directly comparable with the study of Babak et al. We have used multiple alignments and RNAz [ 9] rather than pairwise alignments and QRNA [ 39] to predict conserved secondary structure.
Here, we measured allelic RNA expression ratios in 9 autopsied brain regions from a single individual, using multiple alignment strategies and comparing RNA-Seq derived allelic ratios with a highly sensitive allelic quantitation method (SNaPshot).
Based on maximum identity score and query coverage, the best highly identical 10 sequences were selected and aligned using multiple alignment software program, ClustalW (MEGA tool).
