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The amount of carboxymethyl groups was determined using the Back Titration Method as detailed in the literature [ 24].
We made predictions of HPTFs using the method as detailed in the materials and method section.
For the Correlation part we used the histograms method as detailed in the Methods Section.
The optical arrangement used to experimentally generate the used light-structures is detailed in the Methods Section.
SDS officers use the same methods as Frederick Forsyth detailed in The Day of the Jackal to choose their new identities.
The indirect arithmetic method is the most commonly used standardisation method in the literature.
We adopt three methods based on information contents of GO terms (Resnik [ 23], Schlicker et al. [ 24] and Lin [ 25]) and one method based on the structure of gene ontology (Wang et al. [ 26]) to calculate similarity scores for GO terms, and we use a method in the literature [ 26] to calculate similarity scores for genes (see Methods for details).
The literature search used is detailed in appendix 1 of the supplementary data.
Proteins that belong to both the independent literature test set and the independent SILAC test set were used to determine abundance ratio thresholds defining the nucleolar association classes (as detailed in the Methods and Figure 2).
Here we describe four methods used in the literature to integrate TMS into the MR environment and quantify in detail the efficacy of one approach in filtering RF interference.
Specific datasets used are detailed in Additional File 1, Methods.
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