Sentence examples for using different alignments from inspiring English sources

The two amino acid positions in the core of the CLUSTAL alignment identified to be under positive selection (aa70 and aa133) are not identical to those of the MAP alignment, suggesting that the tests of positive selection using different alignments are not picking up the same evolutionary signals.

It is likely that many of the most conserved sites ('MCS', obtained through phastCons) are shared among the sets of sites identified using different alignments with a varying number of investigated species.

These results highlight the differing results that can be obtained using different alignment algorithms, such as BLAST [46] or CLUSTALW [47], and the intrinsic difficulties in obtaining optimal amino acid alignments for sequences with insertions.

First, we established two subsets of DIMs using different alignment criteria for DIM calling.

Several sets of BLOSUMs exist using different alignment database, where each is named with a number.

Pipelines: Figure 1 compares sensitivity and specificity estimates achieved using different alignment and variant calling program combinations.

We performed the mapping twice using different alignment criteria, stringent (95% identity and 80% alignment coverage) and relaxed (95% identity and 50% alignment coverage).

The raw sequencing data can in turn have several alignments associated, for example, using different aligners or alignment configurations.

The different placement of this taxon is an alignment artifact as both studies used different alignment criteria.

Another possibility would be to use different alignment algorithms under default values, respectively, as did Morrison and Ellis [ 28].

We used different alignment algorithms for these 2 data sets because in each case one program gave a higher quality alignment than the other.