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Using comparative mapping of BAC-end sequences from D. buzzatii onto the D. mojavensis genome (see Figure 1), we identify the breakpoint regions of all inversions.
Similarly, in the dicots, whole genome sequencing has revealed patterns of genome evolution that it had not been possible to detect using comparative mapping of orthologous markers.
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In this study, the genomic region containing SPRN in sheep was investigated using comparative mapping and sequencing and transcription profiling of the SPRN gene were performed.
However, it can also be used for comparative mapping of genomic fragments onto the chromosomes of closely related species, without additional cloning or DNA sequencing, as shown in [27], [28].
We also mapped 145 SSRs as a framework in the consensus map to anchor SNP to each chromosome, so this map provides connections between SNP and SSR markers and can be used for comparative mapping of QTLs linked to SSR markers previously reported in different studies.
Chromosome structures of five Cucumis species were investigated using GISH and comparative mapping of specific satellites.
In particular, we have shown that the BAC library can be used for targeted comparative mapping of genes and regions of interest.
Finally, we will improve our current understanding of chromosome arm rearrangement between Chinook salmon and rainbow trout using comparative analyses of marker-dense maps for the two species.
SSR markers have been extensively used in linkage analysis and comparative mapping of Eucalyptus species[ 10, 46- 48], genetic fingerprinting [ 49], population genetics [ 50], and for clonal fidelity assessment [ 51].
The primary goals of the present study were to establish a Clementine reference map using codominant markers, and to perform comparative mapping of pummelo, sweet orange, and Clementine.
Despite using comparative assembly, a cohort of reads will remain either unmappable or incorrectly mapped.
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