Sentence examples for using blast to search from inspiring English sources

Sequence similarities were determined using BLAST to search the GenBank DNA database [ 14].

Using BLAST to search only the characterized enzyme database allows the closest related sequence with experimentally documented characteristics to be rapidly located.

Initially, 34,138 sequence tags were annotated by using BLAST to search the GenBank non-redundant database [ 24] for matching gene transcripts.

Annotation was performed using BLAST to search for orthologous genes of Trichoderma reesei v.2.0 and Trichoderma virens Gv29-8 v2.0.

To conduct the analysis, we determined the sizes of the Tryp_SPc and CYP450 genes repertoires by using Blast to search the genomes of the 12 Drosophila species followed by gene prediction and refinement (see Materials and Methods in the supplementary materials, Supplementary Material online).

This was accomplished by using BLAST to search for genes in T. saccharolyticum that were homologous to the genes represented in the C. thermocellum model.

We used BLAST to search for protein-encoding genes between each species' transcriptome and those in D. melanogaster, and conversely, the D. melanogaster transcriptome was also searched using BLAST for all protein-encoding genes present in each of the species' transcriptomes in the dataset.

We used BLAST to search the metabolic pathway database50 (release58) in KEGG and homologs in the SwissProt and TrEMBL databases in UniProt51 (release 2011-01).

Based on the consensuse that the 'seed' region (2 7nt in 5' end of mature miRNA) is conserved in the same miRNA family, we used BLAST to search conserved miRNAs against the published miRNA datasets (miRBase release 14.0, September 2009) [50].

First round of PSI-BLAST uses BLAST to search for proteins similar to query in a given database.

After clustering and assembly, we used BLAST to search for similarities between our unigenes and sequences deposited in public databases.