Sentence examples for using blast to compare from inspiring English sources

Sequences were identified in GenBank by using BLAST to compare sequences (www.ncbi.nlm.nih.gov/blast).nih.gov/blast

This entailed matching their catalytic domains against HMM models of each family and using BLAST to compare them against metazoan ePKs.

Using BLAST to compare S. maritima Dscam homologs to our data set (tBLASTn, cutoff 10−9; supplementary file S1, Supplementary Material online), we recover 43 contigs containing the Dscam Ig7 domain.

Determination of the exon-intron organization in the C regions was done using BLAST to compare available cDNA sequences that encode complete TCR chains to the opossum genomic sequences.

The cross-mapping was done by using BLAST to compare Applied Biosystems 60 mer probe sequences to the target transcript sequences interrogated by the probes on Agilent arrays (GEO [ 28] platform GPL1708) and only probes with 100% sequence identity were included in the final gene set.

Others used BLAST to compare metagenomes to the human reference genome [43], [44].

An RBH approach uses BLAST to compare a query sequence against another genome [85], [87].

FastBLAST then uses BLAST to compare each seed sequence to all of these potential members of the ad hoc family.

FastBLAST uses BLAST to compare the unassigned regions, clustered at 65%, to each other (14.1% ⋅14.1%= 2.0% of the work of all-versus all BLAST).

During a merge, FastBLAST uses BLAST to compare the potential seeds from the first database (the non-redundant subset of unassigned regions) to the non-redundant subset of the second database (including both unassigned and assigned regions), and vice versa.

We used BLAST to compare the present set of unknown proteins to other bacilli and found one case (lmo0715) that was similar to a known flagellar protein (FliH).