Sentence examples for using blast to annotate from inspiring English sources

The clean reads that were obtained were compared with the ncRNAs (rRNAs, tRNAs, snRNAs, and snoRNA) deposited in the NCBI GenBank database and the Rfam10.1 database using BLAST to annotate the sRNA sequences.

The clean reads were compared with the ncRNAs (rRNAs, tRNAs, snRNAs, and snoRNA) deposited in the NCBI GenBank database and the Rfam10.1 database using BLAST to annotate the sRNA sequences.

We used BLAST to compare the transcriptomes of acrorhagi from aggressive and non-aggressive polyps to 5,938 annotated toxin protein sequences from the UniProt ToxProt dataset.

Ribosomal RNA genes were annotated using BLAST by comparing to the 244 mitochondrial genomic rRNA database with an e-value ≤10−5 and annotated when its length was ≥ 200 bp or ≥ 300 bp, for the 12S or 16S rRNAs, respectively.

Single-copy genes were identified using BLAST searches of each annotated protein-coding gene of one genome to all other genomes listed in Table 1.

We also performed BlastP searched with all putative TvBspA proteins and investigated their respective Blast hit lists using SPyPhy to annotate them and investigate their level of similarity with the proteins they hit [ 80].

The resulting sequences were annotated by comparison to the protein non-redundant database (UniProt - [60]) using BLAST and submitted to dbEST [61].

The Basic Local Alignment Search Tool (BLAST) was used to annotate S. solea Isotigs and contigs.

In addition, the function of 2374 contigs remains to be elucidated as the blast hit used to annotate these points towards a genomic region rather than an expressed gene.

Candidate sex-determination genes were annotated using BLAST with a minimum e-value of 1 e−04.

Approximately 20% of the 6,723 unique (11,171 total 3'-reads) ESTs data could be annotated using Blast searches against GenBank.