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Using automated segmentation of the retinal layers, the motion correction can be applied to each retinal layer to create images of each of the major vasculature beds in the inner retina that are free of motion artifacts.
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Structural MRI images were processed using automated segmentation algorithms of the FreeSurfer software (Version 4.3; Fischl et al. 2001).
Large-scale longitudinal studies of regional brain volume require reliable quantification using automated segmentation and labeling.
The identified motors (green) that overlaid microtubules (red) are highlighted using automated segmentation (top row).
Freesurfer was used for automated segmentation of the hippocampus and hippocampal subfields.
The combination of different MR contrasts provided by these sequences can be used for automated segmentation of brain tissue and WMLs (see section on processing).
Analysis was performed using automated colour segmentation to select and count the area of the colours of interest, and the same segmentation was performed on all sections.
The intra-session repeatability of PPCT measurements at four quadrants using automated choroidal segmentation software was excellent (intraclass correlation coefficient 0.9998-0.9999).
To characterize the error of optical coherence tomography (OCT) measurements of retinal nerve fiber layer (RNFL) thickness when using automated retinal layer segmentation algorithms without manual refinement.
Typically the analysis system will characterise the morphological features as well as the enhancement kinetics of the lesion (either using automated or manual lesion segmentation), then build a classifier based on those features that yield the highest diagnostic performance [ 27– 29].
This volume was fully segmented into the constituent axons, dendrites, and glia, using the automated segmentation approach of [17], and all synapses in the volume were consequently manually labeled, Figure 1.
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